User:LeoT

• Gene prioritization through genomic data fusion.
• Kernel data fusion.
• Prioritization of miRNA targets.
• Analysis of 3' UTRs and their role in regulation.
• Optimization of medium-throughput screens.

• Gene prioritization through genomic data fusion.
• Kernel data fusion.
• Analysis of regulation by miRNAs.

• Gene prioritization through genomic data fusion.
• Physical-chemistry based analysis of Affymetrix microarray data.
• Analysis of genome structure and repeated region.

Publications

• Using ribosomal protein genes as reference: a tale of caution. Thorrez L, Van Deun K, Tranchevent LC, Van Lommel L, Engelen K, Marchal K, Moreau Y, Van Mechelen I, Schuit F. PLoS ONE. 2008 Mar 26;3(3):e1854.
• ENDEAVOUR update: a web resource for gene prioritization in multiple species. Tranchevent LC*, Barriot R*, Yu S, Van Vooren S, Van Loo P, Coessens B, De Moor B, Aerts S, Moreau Y. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W377-84.
• Comparison of vocabularies, representations and ranking algorithms for gene prioritization by text mining. Yu S, Van Vooren S, Tranchevent LC, De Moor B, Moreau Y. Bioinformatics. 2008 Aug 15;24(16):i119-25.
• Integrating computational biology and forward genetics in Drosophila. Vilain S*, Hu S*, Aerts S*, Tranchevent LC*, Barriot R, Yan J, Moreau Y, Hassan BA, Quan XJ. Under review.

Posters

• Gene prioritization through genomic data fusion. Tranchevent LC, Aerts S, Barriot R, Van Loo P, Yu S, Coessens B, Van Vooren S, and Moreau Y. BESHG, April 25, 2008, Leuven, Belgium.
• Gene prioritization through genomic data fusion. Tranchevent LC, Aerts S, Barriot R, Van Loo P, Yu S, Coessens B, Van Vooren S, and Moreau Y. SymBioSys Meeting, Leuven, Belgium.
• Gene prioritization through genomic data fusion: applications. Tranchevent LC, Aerts S, Thienpont B, Barriot R, Van Loo P, Yu S, Coessens B, Van Vooren S, and Moreau Y. BBC, November 12-13, 2007, Leuven, Belgium.
• Gene prioritization through genomic data fusion: applications. Tranchevent LC, Aerts S, Thienpont B, Barriot R, Van Loo P, Yu S, Coessens B, Van Vooren S, and Moreau Y. BioSapiens workshop, March 03, 2008, Brussels, Belgique.
• Gene prioritization through genomic data fusion: applications. Tranchevent LC, Aerts S, Thienpont B, Barriot R, Van Loo P, Yu S, Coessens B, Van Vooren S, and Moreau Y. MC-GARD, May 04-07, 2008, Madrid, Spain.
• Gene prioritization through genomic data fusion: applications. Tranchevent LC, Aerts S, Thienpont B, Barriot R, Van Loo P, Yu S, Coessens B, Van Vooren S, and Moreau Y. MLSB, September 13-14, 2008, Leuven, Belgium.
• Gene prioritization through genomic data fusion: applications. Tranchevent LC, Aerts S, Thienpont B, Barriot R, Van Loo P, Yu S, Coessens B, Van Vooren S, and Moreau Y. ECCB, September 21-26, 2008, Cagliari, Italy.

Talks

• Gene prioritization using Endeavour. Tranchevent LC and Moreau Y. Technical session of the INSERM Workshop 179, September 25-26, 2007, Paris, France.
• Gene prioritization through genomic data fusion: applications. Tranchevent LC, Aerts S, Thienpont B, Barriot R, Van Loo P, Yu S, Coessens B, Van Vooren S, and Moreau Y. at the BBC, November 12-13, 2007, Leuven, Belgium.
• Optimization of a genetic screen. Tranchevent LC, Vilain S, Hu S, Aerts S, Barriot R, Yan J, Moreau Y, Hassan BA, Quan XJ. at the EURO-CBBM workshop, September 15-17, 2008, Rome, Italy.

Publications

• Kernel-based data fusion for gene prioritization. De Bie T, Tranchevent LC, van Oeffelen LM and Moreau Y. Bioinformatics, 2007 Jul, 1;23(13):i125-32.

Posters

• ENDEAVOUR, genome wide prioritization for multiple species. Tranchevent LC, Aerts S, Van Loo P, Shi Y, Barriot R, Coessens B, Hassan B and Moreau Y. ISMB, july 21-25, 2007, Vienna, Austria.
• ENDEAVOUR, genome wide prioritization for multiple species. Tranchevent LC, Aerts S, Van Loo P, Shi Y, Barriot R, Coessens B, Hassan B and Moreau Y. IAP Study day, february 15, 2007, Luik, Belgium.
• Gene prioritization through genomic data fusion. Tranchevent LC, Aerts S, Van Loo P, Shi Y, Coessens B, Hassan B and Moreau Y. BioScope-IT Annual meeting, november 24, 2006, Gent Belgium.
• ENDEAVOUR, genome wide prioritization for multiple species. Tranchevent LC, Aerts S, Van Loo P, Shi Y, Barriot R, Coessens B, Hassan B and Moreau Y. IAP Study day, october 24, 2006, Leuven, Belgium.
• ENDEAVOUR, genome wide prioritization for multiple species. Tranchevent LC, Aerts S, Van Loo P, Shi Y, Barriot R, Coessens B, Hassan B and Moreau Y. BBC, october 17-18, 2006, Wageningen, The Netherlands.

Talks

• Gene prioritization through genomic data fusion. Tranchevent LC, Aerts S, Van Loo P, Shi Y, Coessens B, Hassan B and Moreau Y. BioScope-IT Annual meeting, november 24, 2006, Gent Belgium.
• ENDEAVOUR, genome wide prioritization for multiple species. Tranchevent LC, Aerts S, Van Loo P, Shi Y, Barriot R, Coessens B, Hassan B and Moreau Y. EURO-CBBM workshop, July 8, 2007, Prague, Czech Republic.
• ENDEAVOUR, a software for genome wide prioritization. Tranchevent LC, Aerts S, Van Loo P, Shi Y, Barriot R, Coessens B and Moreau Y. ISMB 2007 (demonstration track), july 21-25, 2007, Vienna, Austria.
• Kernel-based data fusion for gene prioritization. De Bie T, Tranchevent LC, van Oeffelen LM and Moreau Y. ISMB 2007 (paper track), july 21-25, 2007, Vienna, Austria.
• Gene prioritization through genomic data fusion. Van Loo P, Aerts S, Lambrechts D, Maity S, Coessens B, De Smet F, Tranchevent LC, De Moor B, Marynen P, Hassan B, Carmeliet P and Moreau Y. ISMB 2007 (highlight track), july 21-25, 2007, Vienna, Austria.

Publications

• Gene prioritization through genomic data fusion. Aerts S, Lambrechts D, Maity S, Van Loo P, Coessens B, De Smet F, Tranchevent LC, De Moor B, Marynen P, Hassan B, Carmeliet P and Moreau Y. Nature Biotechnology, 2006 May, 24(5):537-544. PMID: 16680138.
• Physical-chemistry based analysis of Affymetrix microarray data. Heim T, Tranchevent LC, Carlon E and Barkema GT. J. Phys. Chem. B 110, 22786 (2006).

Posters

• Physical models of hybridization in high density oligonucleotides microarrays. Carlon E, Heim T and Tranchevent LC. Gent-Lille Workshop on Computational Biology.

Talks

• Gene prioritization through genomic data fusion. Van Loo P, Aerts S, Lambrechts D, Maity S, Coessens B, De Smet F, Tranchevent LC, De Moor B, Marynen P, Hassan B, Carmeliet P and Moreau Y. 2nd ISCB Student Council Symposium, August 6th, Fortaleza, Brazil.

Workshops

• SymBioSys (K.U.Leuven Center for Systems Biology) Meeting (KUL - Belgium)
• VIB microarray User Meeting in Leuven (KUL - Belgium)

Teaching

• Exercise session of the Bioinformatics course of Pf. Yves Moreau (master of bioinformatics, first semester, Leuven)
• Technical session of the INSERM workshop 179 titled “Polymorphism and genome rearrangements: analysis of CGH and SNP array data”, September 25-26, 2007, Paris, France.

Visit

• Visit Alexander Griekspoor (Dietrich Rebholz's group) for a project about prioritization of miRNA targets (EBI, Cambridge, UK - 1 week)

Workshops

• IAP Study day, october 24, 2006, Leuven, Belgium.
• IAP Study day, february 15, 2007, Luik, Belgium.
• SymBioSys Kickoff Meeting in Leuven (UZ Gasthuisberg - Belgium).
• VIB Microarray User Meeting in Leuven (KUL - Belgium)

Fellowship meetings

• IBM meeting.

Courses

• Machine learning and inductive inference by Pf. Hendrick Blockeel (Katholieke Universiteit Leuven)
• Bioinformatics by Pf. Yves Moreau (Katholieke Universiteit Leuven)

Workshops

• Gent-Lille Workshop on Computational Biology in Lille (Polytech'Lille - France)
• IAP Study Day in Louvain-la-Neuve (Belgium)
• SymBioSys Kickoff Meeting in Leuven (UZ Gasthuisberg - Belgium)
• VIB Microarray User Meeting in Ghent (VIB - Belgium)